Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007765.1 Corchorus olitorius cultivar O-4 contig07791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1260
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26


Found at i:271 original size:18 final size:18

Alignment explanation


    Indices: 248--283  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        238 TTAATGGCTA

                              
        248 AAAAACAATAGGACTTAC
          1 AAAAACAATAGGACTTAC

                              
        266 AAAAACAATAGGACTTAC
          1 AAAAACAATAGGACTTAC

        284 TCTGGCCTGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.56, C:0.17, G:0.11, T:0.17


Consensus pattern (18 bp):   
AAAAACAATAGGACTTAC
Done.