Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000777.1 Corchorus olitorius cultivar O-4 contig00777, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 959

Length: 1599
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31


Found at i:1345 original size:71 final size:71

Alignment explanation


    Indices: 1209--1386  Score: 277
    Period size: 71  Copynumber: 2.5  Consensus size: 71

       1199 TTGTACATGC

                         *            **       *    *                    *   
       1209 ATGGTCAAACCCCTAAGTTTAATAGTTTAA-AAAACACCATTGTACATGCATGGTCAAACCTCAA
          1 ATGGTCAAACCCCAAAGTTTAATAGTCAAACAAAAAACCAGTGTACATGCATGGTCAAACCCCAA

                  
       1273 AAGATG
         66 AAGATG

                                                 *                           
       1279 ATGGTCAAACCCCAAAGTTTAATAGTCAAACAAAAAATCAGTGTACATGCATGGTCAAACCCCAA
          1 ATGGTCAAACCCCAAAGTTTAATAGTCAAACAAAAAACCAGTGTACATGCATGGTCAAACCCCAA

                  
       1344 AAGATG
         66 AAGATG

                                    *            
       1350 ATGGTCAAACCCCAAAGTTTAATAATCAAACAAAAAA
          1 ATGGTCAAACCCCAAAGTTTAATAGTCAAACAAAAAA

       1387 AAACATCATT


Statistics
Matches: 99,  Mismatches: 8, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  70   27  0.27
  71   72  0.73

ACGTcount: A:0.44, C:0.20, G:0.13, T:0.22


Consensus pattern (71 bp):   
ATGGTCAAACCCCAAAGTTTAATAGTCAAACAAAAAACCAGTGTACATGCATGGTCAAACCCCAA
AAGATG
Done.