Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007770.1 Corchorus olitorius cultivar O-4 contig07796, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1222
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31


Found at i:422 original size:21 final size:21

Alignment explanation


    Indices: 398--510  Score: 158
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        388 CTTAGGCAAT

                         *       
        398 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        419 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        440 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

              *                   
        461 TCTAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        482 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        503 TCCAATGA
          1 TCCAATGA

        511 ACTTCTAGCA


Statistics
Matches: 85,  Mismatches: 6, Indels: 2
        0.91            0.06        0.02

Matches are distributed among these distances:
  20    3  0.04
  21   82  0.96

ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.