Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007775.1 Corchorus olitorius cultivar O-4 contig07801, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1701
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33


Found at i:480 original size:71 final size:73

Alignment explanation


    Indices: 368--510  Score: 236
    Period size: 71  Copynumber: 2.0  Consensus size: 73

        358 ATTACTTGCA

                            *                 *                              
        368 TGGAATTAATGTAATGTACTATAACGGTTAACAATTAATTAAGAAATTAAGAATTGTTTTATATA
          1 TGGAATTAA-GTAATGAACTATAACGGTTAACAAGTAATTAAGAAATTAAGAATTGTTTTATATA

                     
        433 TTGTATACT
         65 TTGTATACT

                                                             *               
        442 TGGAATTAA-TAATGAACTATAAC-GTTAACAAGTAATTAAGAAATTAATAATTGTTTTATATAT
          1 TGGAATTAAGTAATGAACTATAACGGTTAACAAGTAATTAAGAAATTAAGAATTGTTTTATATAT

                  
        505 TGTATA
         66 TGTATA

        511 ACGCTAAAAA


Statistics
Matches: 66,  Mismatches: 3, Indels: 3
        0.92            0.04        0.04

Matches are distributed among these distances:
  71   44  0.67
  72   13  0.20
  74    9  0.14

ACGTcount: A:0.43, C:0.05, G:0.13, T:0.40


Consensus pattern (73 bp):   
TGGAATTAAGTAATGAACTATAACGGTTAACAAGTAATTAAGAAATTAAGAATTGTTTTATATAT
TGTATACT

Found at i:626 original size:4 final size:4

Alignment explanation


    Indices: 610--656  Score: 85
    Period size: 4  Copynumber: 11.8  Consensus size: 4

        600 GGAACTAAGA

                   *                                                  
        610 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
          1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA

        657 TTTTTAATGC


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   4   41  1.00

ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26


Consensus pattern (4 bp):   
ATAC

Done.