Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007777.1 Corchorus olitorius cultivar O-4 contig07803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1053
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41


Found at i:197 original size:13 final size:13

Alignment explanation


    Indices: 179--204  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        169 TATTTTTATA

                         
        179 AATATTTTAATTT
          1 AATATTTTAATTT

                         
        192 AATATTTTAATTT
          1 AATATTTTAATTT

        205 TAAAAAATTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (13 bp):   
AATATTTTAATTT
Done.