Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007784.1 Corchorus olitorius cultivar O-4 contig07810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:478 original size:22 final size:22

Alignment explanation


    Indices: 448--493  Score: 56
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        438 AAAATCTCCT

                *             *   
        448 AATTGAACCTCTGGAGAGGTCG
          1 AATTCAACCTCTGGAGAGATCG

                      *  *        
        470 AATTCAACCTTTGTAGAGATCG
          1 AATTCAACCTCTGGAGAGATCG

              
        492 AA
          1 AA

        494 ACAACAACTT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26


Consensus pattern (22 bp):   
AATTCAACCTCTGGAGAGATCG
Done.