Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000779.1 Corchorus olitorius cultivar O-4 contig00779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33


Found at i:479 original size:33 final size:33

Alignment explanation


    Indices: 442--516  Score: 150
    Period size: 33  Copynumber: 2.3  Consensus size: 33

        432 TTCATCATGC

                                             
        442 TCATCTGCTTTCGCAATTCCTCATTCTCCTTCT
          1 TCATCTGCTTTCGCAATTCCTCATTCTCCTTCT

                                             
        475 TCATCTGCTTTCGCAATTCCTCATTCTCCTTCT
          1 TCATCTGCTTTCGCAATTCCTCATTCTCCTTCT

                     
        508 TCATCTGCT
          1 TCATCTGCT

        517 GGTACTCAGT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   42  1.00

ACGTcount: A:0.12, C:0.36, G:0.07, T:0.45


Consensus pattern (33 bp):   
TCATCTGCTTTCGCAATTCCTCATTCTCCTTCT
Done.