Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007790.1 Corchorus olitorius cultivar O-4 contig07817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1057
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31


Found at i:694 original size:30 final size:29

Alignment explanation


    Indices: 654--720  Score: 100
    Period size: 30  Copynumber: 2.3  Consensus size: 29

        644 ATTTGAGTGG

                                          
        654 GGGC-AAAATGTCCAAAATTGATAGTTTAT
          1 GGGCAAAAATGTCCAAAATTGA-AGTTTAT

                         *               
        683 GGGCAAAAATGTCTAAAATTGAAGTTTAT
          1 GGGCAAAAATGTCCAAAATTGAAGTTTAT

                     
        712 GGAGCAAAA
          1 GG-GCAAAA

        721 CGTCTAAACA


Statistics
Matches: 35,  Mismatches: 1, Indels: 3
        0.90            0.03        0.08

Matches are distributed among these distances:
  29   13  0.37
  30   22  0.63

ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27


Consensus pattern (29 bp):   
GGGCAAAAATGTCCAAAATTGAAGTTTAT

Found at i:708 original size:29 final size:29

Alignment explanation


    Indices: 654--728  Score: 107
    Period size: 29  Copynumber: 2.6  Consensus size: 29

        644 ATTTGAGTGG

                        *                
        654 GGGCAAAATGTCCAAAATTGATAGTTTAT
          1 GGGCAAAATGTCTAAAATTGATAGTTTAT

                                          
        683 GGGCAAAAATGTCTAAAATTGA-AGTTTAT
          1 GGGC-AAAATGTCTAAAATTGATAGTTTAT

                     *       
        712 GGAGCAAAACGTCTAAA
          1 GG-GCAAAATGTCTAAA

        729 CACTACAAGC


Statistics
Matches: 42,  Mismatches: 2, Indels: 4
        0.88            0.04        0.08

Matches are distributed among these distances:
  29   24  0.57
  30   18  0.43

ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27


Consensus pattern (29 bp):   
GGGCAAAATGTCTAAAATTGATAGTTTAT
Done.