Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007809.1 Corchorus olitorius cultivar O-4 contig07836, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972

Length: 1620
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:688 original size:26 final size:26

Alignment explanation


    Indices: 640--691  Score: 68
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        630 AAAATAGGCA

                              *       
        640 AATTAAACTAGAAAACAATAAAATAG
          1 AATTAAACTAGAAAACAAGAAAATAG

                        * **          
        666 AATTAAACTAGAGATTAAGAAAATAG
          1 AATTAAACTAGAAAACAAGAAAATAG

        692 TTTGAGAAAA


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21


Consensus pattern (26 bp):   
AATTAAACTAGAAAACAAGAAAATAG
Done.