Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007810.1 Corchorus olitorius cultivar O-4 contig07837, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:248 original size:36 final size:35

Alignment explanation


    Indices: 184--308  Score: 117
    Period size: 37  Copynumber: 3.5  Consensus size: 35

        174 ACTTGGTGGG

                                   *      *      
        184 AACTTTAAAAACTGAATGGGAGCCTTCCCAGTTTGAA
          1 AACTTT-AAAACTG-ATGGGAGCTTTCCCAATTTGAA

                       *        *             **
        221 AACTTTAAAAGGTGATGGGAACTTTCCCAATTTGGC
          1 AACTTTAAAA-CTGATGGGAGCTTTCCCAATTTGAA

              *                   *              
        257 AATTTTGAAAACTGGATGGGAGTTTTCCCAATTTGAA
          1 AACTTT-AAAACT-GATGGGAGCTTTCCCAATTTGAA

                     *      
        294 AAC-TTAAACCTGATG
          1 AACTTTAAAACTGATG

        309 AAATTCTTTT


Statistics
Matches: 71,  Mismatches: 14, Indels: 9
        0.76            0.15        0.10

Matches are distributed among these distances:
  34    4  0.06
  35    5  0.07
  36   29  0.41
  37   33  0.46

ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30


Consensus pattern (35 bp):   
AACTTTAAAACTGATGGGAGCTTTCCCAATTTGAA
Done.