Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007811.1 Corchorus olitorius cultivar O-4 contig07838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 825

Length: 1375
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38


Found at i:652 original size:6 final size:6

Alignment explanation


    Indices: 634--663  Score: 51
    Period size: 6  Copynumber: 4.8  Consensus size: 6

        624 GTTTAGACTT

                                              
        634 ATATAG TATATAG ATATAG ATATAG ATATA
          1 ATATAG -ATATAG ATATAG ATATAG ATATA

        664 TGATTGTTGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   17  0.74
   7    6  0.26

ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37


Consensus pattern (6 bp):   
ATATAG

Done.