Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007815.1 Corchorus olitorius cultivar O-4 contig07842, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 665

Length: 1109
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33


Found at i:88 original size:35 final size:35

Alignment explanation


    Indices: 47--146  Score: 141
    Period size: 35  Copynumber: 2.9  Consensus size: 35

         37 AAGGCAAAAC

                                    *  **        
         47 TCTTCTCCATCAAGCAAAGCAA-ATCTGCAGCAAAGT
          1 TCTTCTCCATCAA-CAAAGCAACAAC-AAAGCAAAGT

                                               
         83 T-TTCTCCATCAACAAAGCAACAACAAAGCAAAGT
          1 TCTTCTCCATCAACAAAGCAACAACAAAGCAAAGT

                                          
        117 TCTTCTCCATCAACAAAGCAACAACAAAGC
          1 TCTTCTCCATCAACAAAGCAACAACAAAGC

        147 CTACGAAAGT


Statistics
Matches: 59,  Mismatches: 3, Indels: 5
        0.88            0.04        0.07

Matches are distributed among these distances:
  34   17  0.29
  35   41  0.69
  36    1  0.02

ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19


Consensus pattern (35 bp):   
TCTTCTCCATCAACAAAGCAACAACAAAGCAAAGT

Done.