Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007821.1 Corchorus olitorius cultivar O-4 contig07848, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1758
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32


Found at i:81 original size:21 final size:22

Alignment explanation


    Indices: 41--81  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

         31 GACAAACTCG

                           *      
         41 TAACCCGAATAACCCGAGAAAA
          1 TAACCCGAATAACCCAAGAAAA

                      *         
         63 TAACCCG-ATGACCCAAGAA
          1 TAACCCGAATAACCCAAGAA

         82 TATTATAAAC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   10  0.59
  22    7  0.41

ACGTcount: A:0.46, C:0.29, G:0.15, T:0.10


Consensus pattern (22 bp):   
TAACCCGAATAACCCAAGAAAA
Done.