Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007826.1 Corchorus olitorius cultivar O-4 contig07853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2152
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38


Found at i:2129 original size:15 final size:16

Alignment explanation


    Indices: 2109--2150  Score: 68
    Period size: 15  Copynumber: 2.7  Consensus size: 16

       2099 GCAGAGGTTG

                            
       2109 AAAGAAAACAATTA-A
          1 AAAGAAAACAATTATA

                            
       2124 AAAGAAAACAATTATA
          1 AAAGAAAACAATTATA

             *         
       2140 ATAGAAAACAA
          1 AAAGAAAACAA

       2151 AA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   14  0.56
  16   11  0.44

ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14


Consensus pattern (16 bp):   
AAAGAAAACAATTATA

Done.