Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007830.1 Corchorus olitorius cultivar O-4 contig07857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 821

Length: 1369
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29


Found at i:464 original size:12 final size:12

Alignment explanation


    Indices: 449--484  Score: 54
    Period size: 12  Copynumber: 3.0  Consensus size: 12

        439 AATAGTCAGC

                        
        449 AAAAAAAAAGAA
          1 AAAAAAAAAGAA

                     *  
        461 AAAAAAAAACAA
          1 AAAAAAAAAGAA

                   *    
        473 AAAAAAACAGAA
          1 AAAAAAAAAGAA

        485 TCCGTTAGAC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.89, C:0.06, G:0.06, T:0.00


Consensus pattern (12 bp):   
AAAAAAAAAGAA

Found at i:930 original size:22 final size:22

Alignment explanation


    Indices: 905--949  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        895 GAGATTTAGG

                    *             
        905 GTTTGAGTGGAAGGAAGAAGAA
          1 GTTTGAGTCGAAGGAAGAAGAA

                       *          
        927 GTTTGAGTCGAGGGAAGAAGAA
          1 GTTTGAGTCGAAGGAAGAAGAA

             
        949 G
          1 G

        950 AAATAACGGT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.38, C:0.02, G:0.42, T:0.18


Consensus pattern (22 bp):   
GTTTGAGTCGAAGGAAGAAGAA
Done.