Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007836.1 Corchorus olitorius cultivar O-4 contig07863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34


Found at i:709 original size:15 final size:16

Alignment explanation


    Indices: 689--718  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        679 TGTAAGTTTA

                            
        689 TCAAAA-ATCAATTTT
          1 TCAAAAGATCAATTTT

                           
        704 TCAAAAGATCAATTT
          1 TCAAAAGATCAATTT

        719 GAATTCACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37


Consensus pattern (16 bp):   
TCAAAAGATCAATTTT

Done.