Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000784.1 Corchorus olitorius cultivar O-4 contig00784, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37


Found at i:52 original size:22 final size:22

Alignment explanation


    Indices: 17--80  Score: 94
    Period size: 22  Copynumber: 2.9  Consensus size: 22

          7 TATTAACTTT

                  *       *       
         17 CCCTATAAAATTTTAATAACCA
          1 CCCTATGAAATTTTGATAACCA

                                   
         39 -CCTAATGAAATTTTGATAACCA
          1 CCCT-ATGAAATTTTGATAACCA

                                
         61 CCCTATGAAATTTTGATAAC
          1 CCCTATGAAATTTTGATAAC

         81 TGTAACACCC


Statistics
Matches: 38,  Mismatches: 2, Indels: 4
        0.86            0.05        0.09

Matches are distributed among these distances:
  21    3  0.08
  22   32  0.84
  23    3  0.08

ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33


Consensus pattern (22 bp):   
CCCTATGAAATTTTGATAACCA
Done.