Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007844.1 Corchorus olitorius cultivar O-4 contig07871, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1066
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:468 original size:21 final size:21

Alignment explanation


    Indices: 442--491  Score: 100
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        432 CTTATCAGAC

                                 
        442 CGGACCGGCGGTTGAACCGGT
          1 CGGACCGGCGGTTGAACCGGT

                                 
        463 CGGACCGGCGGTTGAACCGGT
          1 CGGACCGGCGGTTGAACCGGT

                    
        484 CGGACCGG
          1 CGGACCGG

        492 TCAAACTGCC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.14, C:0.30, G:0.44, T:0.12


Consensus pattern (21 bp):   
CGGACCGGCGGTTGAACCGGT
Done.