Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007847.1 Corchorus olitorius cultivar O-4 contig07874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 864

Length: 1441
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28


Found at i:324 original size:2 final size:2

Alignment explanation


    Indices: 317--360  Score: 63
    Period size: 2  Copynumber: 22.5  Consensus size: 2

        307 TCGAATCATA

                                                *           *             
        317 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT TT AT AT AT -T
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                
        358 AT A
          1 AT A

        361 ATAAAATTTT


Statistics
Matches: 37,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   36  0.97

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (2 bp):   
AT

Done.