Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007848.1 Corchorus olitorius cultivar O-4 contig07875, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36


Found at i:35 original size:16 final size:17

Alignment explanation


    Indices: 6--46  Score: 50
    Period size: 16  Copynumber: 2.5  Consensus size: 17

          1 CTATT

                            *
          6 TATCTA-TTATTCTCTG
          1 TATCTATTTATTCTCTA

                             
         22 TATCTATTTA-TCTCTA
          1 TATCTATTTATTCTCTA

              *      
         38 TACCTATTT
          1 TATCTATTT

         47 TTTTTAATTA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  16   19  0.86
  17    3  0.14

ACGTcount: A:0.22, C:0.20, G:0.02, T:0.56


Consensus pattern (17 bp):   
TATCTATTTATTCTCTA
Done.