Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007851.1 Corchorus olitorius cultivar O-4 contig07878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3263
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30


Found at i:3218 original size:36 final size:34

Alignment explanation


    Indices: 3169--3239  Score: 88
    Period size: 36  Copynumber: 2.0  Consensus size: 34

       3159 ACCAAGACAA

                           *  *               
       3169 CAAATATCCCACCCGGCCTAAACACTAAACCCAT
          1 CAAATATCCCACCCGACCCAAACACTAAACCCAT

                                  * *           
       3203 CAAATATACCCCACCCGACCCATATACTAAACCCAT
          1 CAAATAT--CCCACCCGACCCAAACACTAAACCCAT

             
       3239 C
          1 C

       3240 TAAAAAAACA


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  34    7  0.23
  36   24  0.77

ACGTcount: A:0.38, C:0.42, G:0.04, T:0.15


Consensus pattern (34 bp):   
CAAATATCCCACCCGACCCAAACACTAAACCCAT
Done.