Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007856.1 Corchorus olitorius cultivar O-4 contig07883, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37


Found at i:399 original size:22 final size:22

Alignment explanation


    Indices: 374--415  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        364 AAGATAATAA

                *         *       
        374 TATAGTTTTTAAAATAATCACT
          1 TATACTTTTTAAAACAATCACT

                       *        
        396 TATACTTTTTAGAACAATCA
          1 TATACTTTTTAAAACAATCA

        416 TTGAAGCTTT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43


Consensus pattern (22 bp):   
TATACTTTTTAAAACAATCACT
Done.