Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007860.1 Corchorus olitorius cultivar O-4 contig07887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1765
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28


Found at i:142 original size:42 final size:45

Alignment explanation


    Indices: 91--184  Score: 133
    Period size: 45  Copynumber: 2.2  Consensus size: 45

         81 AGTGCATTAC

                                      *                  
         91 CTAA-ATTCTACT-C-C-ATCTCTAGGTAATTCATCAAAATAAAG
          1 CTAATATTCTACTCCTCTATCTCTAGATAATTCATCAAAATAAAG

                                               *         
        132 CTAATATTCTACTCCTCTATCTCTAGATAATTCATTAAAATAAAG
          1 CTAATATTCTACTCCTCTATCTCTAGATAATTCATCAAAATAAAG

            *       
        177 TTAATATT
          1 CTAATATT

        185 AATTGTTACT


Statistics
Matches: 46,  Mismatches: 3, Indels: 4
        0.87            0.06        0.08

Matches are distributed among these distances:
  41    4  0.09
  42    8  0.17
  43    1  0.02
  44    1  0.02
  45   32  0.70

ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37


Consensus pattern (45 bp):   
CTAATATTCTACTCCTCTATCTCTAGATAATTCATCAAAATAAAG

Done.