Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007861.1 Corchorus olitorius cultivar O-4 contig07888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.36


Found at i:78 original size:2 final size:2

Alignment explanation


    Indices: 71--105  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

         61 TACTATTTAG

                                                                
         71 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        106 TAAATATAGA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Done.