Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007862.1 Corchorus olitorius cultivar O-4 contig07889, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1665
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:614 original size:22 final size:21

Alignment explanation


    Indices: 562--615  Score: 60
    Period size: 19  Copynumber: 2.6  Consensus size: 21

        552 TGCTTCTTGA

                                  
        562 AATAATTCTTC-AATGATCTTC
          1 AATAA-TCTTCAAATGATCTTC

                          *      
        583 -A-AATCTTCAAATTATCTTC
          1 AATAATCTTCAAATGATCTTC

                          
        602 AATAAGTCTTCAAA
          1 AATAA-TCTTCAAA

        616 CAGGAATTTC


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    5  0.18
  19   11  0.39
  20    2  0.07
  21    2  0.07
  22    8  0.29

ACGTcount: A:0.39, C:0.19, G:0.04, T:0.39


Consensus pattern (21 bp):   
AATAATCTTCAAATGATCTTC
Done.