Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007866.1 Corchorus olitorius cultivar O-4 contig07893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1181
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35


Found at i:339 original size:12 final size:12

Alignment explanation


    Indices: 324--355  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        314 TTTCTGACTC

                        
        324 TTTTTTTTTGTT
          1 TTTTTTTTTGTT

                  *     
        336 TTTTTTGTTGTT
          1 TTTTTTTTTGTT

                    
        348 TTTTTTTT
          1 TTTTTTTT

        356 GCGAAATTTC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91


Consensus pattern (12 bp):   
TTTTTTTTTGTT

Found at i:720 original size:20 final size:20

Alignment explanation


    Indices: 695--734  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        685 CCATTCAGCA

                                
        695 TCATCCAATTTGATCTCTCT
          1 TCATCCAATTTGATCTCTCT

                                
        715 TCATCCAATTTGATCTCTCT
          1 TCATCCAATTTGATCTCTCT

        735 ATAAACCCTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.20, C:0.30, G:0.05, T:0.45


Consensus pattern (20 bp):   
TCATCCAATTTGATCTCTCT
Done.