Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007868.1 Corchorus olitorius cultivar O-4 contig07895, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1336
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29


Found at i:946 original size:21 final size:21

Alignment explanation


    Indices: 916--958  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        906 CTACTTGAGA

                                 
        916 AATGGCGGTTACAGTCTAAGC
          1 AATGGCGGTTACAGTCTAAGC

                 *               
        937 AATGGTGGTTACAGTCTAAGC
          1 AATGGCGGTTACAGTCTAAGC

             
        958 A
          1 A

        959 TCTTCGCCAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26


Consensus pattern (21 bp):   
AATGGCGGTTACAGTCTAAGC
Done.