Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000787.1 Corchorus olitorius cultivar O-4 contig00787, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1250
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31


Found at i:1004 original size:22 final size:23

Alignment explanation


    Indices: 958--1014  Score: 80
    Period size: 22  Copynumber: 2.5  Consensus size: 23

        948 CCTAAAGTAT

                            *   *  
        958 AAAAAGAAATAATAATTAAATAA
          1 AAAAAGAAATAATAATCAAACAA

                 *                 
        981 AAAAATAAATAA-AATCAAACAA
          1 AAAAAGAAATAATAATCAAACAA

                        
       1003 AAAAAGAAATAA
          1 AAAAAGAAATAA

       1015 CACCTCTCTC


Statistics
Matches: 30,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  22   19  0.63
  23   11  0.37

ACGTcount: A:0.77, C:0.04, G:0.04, T:0.16


Consensus pattern (23 bp):   
AAAAAGAAATAATAATCAAACAA
Done.