Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007872.1 Corchorus olitorius cultivar O-4 contig07899, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37


Found at i:451 original size:22 final size:22

Alignment explanation


    Indices: 406--456  Score: 59
    Period size: 22  Copynumber: 2.3  Consensus size: 22

        396 TGCTTTCTGA

                              **  
        406 TTAATTGTTTTCTTTAATTTTC
          1 TTAATTGTTTTCTTTAATAGTC

              *                    
        428 TTGATTGTTTTC-TTAGATAGTC
          1 TTAATTGTTTTCTTTA-ATAGTC

                   
        450 TTAATTG
          1 TTAATTG

        457 CTAGATTGGT


Statistics
Matches: 24,  Mismatches: 4, Indels: 2
        0.80            0.13        0.07

Matches are distributed among these distances:
  21    3  0.12
  22   21  0.88

ACGTcount: A:0.20, C:0.08, G:0.12, T:0.61


Consensus pattern (22 bp):   
TTAATTGTTTTCTTTAATAGTC
Done.