Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007875.1 Corchorus olitorius cultivar O-4 contig07902, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1446
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:1137 original size:27 final size:28

Alignment explanation


    Indices: 1073--1147  Score: 98
    Period size: 27  Copynumber: 2.7  Consensus size: 28

       1063 AGGATCACCT

                               *         
       1073 AGGGGCATTTTGGTCATTTTCAAAAATTC
          1 AGGGGCATTTTGGTCATTTGC-AAAATTC

               *                   **   
       1102 AGGTGCATTTTGGTCATTTGC-ACGTTC
          1 AGGGGCATTTTGGTCATTTGCAAAATTC

                               
       1129 AGGGGCATTTTGGTCATTT
          1 AGGGGCATTTTGGTCATTT

       1148 TAGGTTCACT


Statistics
Matches: 41,  Mismatches: 5, Indels: 2
        0.85            0.10        0.04

Matches are distributed among these distances:
  27   22  0.54
  29   19  0.46

ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40


Consensus pattern (28 bp):   
AGGGGCATTTTGGTCATTTGCAAAATTC
Done.