Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007877.1 Corchorus olitorius cultivar O-4 contig07904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1083
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36


Found at i:114 original size:14 final size:14

Alignment explanation


    Indices: 95--125  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

         85 TAAAATTTTG

                   *      
         95 TTTCAAATAAAAAT
          1 TTTCAAACAAAAAT

                          
        109 TTTCAAACAAAAAT
          1 TTTCAAACAAAAAT

               
        123 TTT
          1 TTT

        126 ATTCGGAGGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39


Consensus pattern (14 bp):   
TTTCAAACAAAAAT

Found at i:708 original size:18 final size:19

Alignment explanation


    Indices: 669--708  Score: 55
    Period size: 21  Copynumber: 2.1  Consensus size: 19

        659 GTGCTCCCGT

                                 
        669 TGTGATGCTCCCACTTTTCAA
          1 TGTGATGCTCCCA--TTTCAA

                               
        690 TGTGATGCTCCCA-TTCAA
          1 TGTGATGCTCCCATTTCAA

             
        708 T
          1 T

        709 TCTGACCATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    6  0.32
  21   13  0.68

ACGTcount: A:0.20, C:0.28, G:0.15, T:0.38


Consensus pattern (19 bp):   
TGTGATGCTCCCATTTCAA
Done.