Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007888.1 Corchorus olitorius cultivar O-4 contig07915, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 713

Length: 1189
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39


Found at i:51 original size:26 final size:26

Alignment explanation


    Indices: 22--73  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

         12 TGTTTTGGAT

                                      
         22 TGTTTTTGATTGATCATATATTATTC
          1 TGTTTTTGATTGATCATATATTATTC

                   *                  
         48 TGTTTTTTATTGATCATATATTATTC
          1 TGTTTTTGATTGATCATATATTATTC

         74 CCCAATTTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.23, C:0.08, G:0.10, T:0.60


Consensus pattern (26 bp):   
TGTTTTTGATTGATCATATATTATTC

Found at i:523 original size:9 final size:10

Alignment explanation


    Indices: 497--522  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        487 TTTCTGTACT

                      
        497 AAAAAAATAA
          1 AAAAAAATAA

                      
        507 AAAAAAATAA
          1 AAAAAAATAA

                  
        517 AAAAAA
          1 AAAAAA

        523 TTCATTGCTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08


Consensus pattern (10 bp):   
AAAAAAATAA
Done.