Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007892.1 Corchorus olitorius cultivar O-4 contig07919, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33


Found at i:886 original size:48 final size:47

Alignment explanation


    Indices: 811--951  Score: 169
    Period size: 49  Copynumber: 3.0  Consensus size: 47

        801 GAGCGTGCCA

                        *         *         *        *      
        811 ATCAATTTTGTCAAAAAATTGATAAAAAGTGCGA-TGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAAGT-AAAAATAAAAG

                                                             
        858 ATCAATTTTGTCTTAAAAATTGAGAAAAAGATGCAAGTAAAAATAAAAG
          1 ATCAATTTTGTC-TAAAAATTGAGAAAAAG-TGCAAGTAAAAATAAAAG

            *           *                            *    
        907 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGC-AGTAAAAGTAAA
          1 ATCAATTTTGT-CTAAAAATTGAGAAAAAGTGCAAGTAAAAATAAA

        952 GATTGCTTGG


Statistics
Matches: 83,  Mismatches: 7, Indels: 8
        0.85            0.07        0.08

Matches are distributed among these distances:
  47   23  0.28
  48   18  0.22
  49   41  0.49
  50    1  0.01

ACGTcount: A:0.51, C:0.06, G:0.16, T:0.28


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAAGTAAAAATAAAAG

Done.