Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007894.1 Corchorus olitorius cultivar O-4 contig07921, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1290
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33


Found at i:587 original size:18 final size:18

Alignment explanation


    Indices: 564--605  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        554 TATATACTAT

                      *        
        564 TAATATT-TATTAGTATAA
          1 TAATATTATAATA-TATAA

                              
        582 TAATATTATAATATATAA
          1 TAATATTATAATATATAA

                   
        600 T-ATATT
          1 TAATATT

        606 CTTAGTTGAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  17    5  0.23
  18   13  0.59
  19    4  0.18

ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50


Consensus pattern (18 bp):   
TAATATTATAATATATAA
Done.