Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007907.1 Corchorus olitorius cultivar O-4 contig07934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 701

Length: 1169
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:640 original size:20 final size:20

Alignment explanation


    Indices: 617--659  Score: 61
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        607 AAAATTGTGT

                                 
        617 TTTGCGTCGA-AAAAAAAAAA
          1 TTTGCGTC-ATAAAAAAAAAA

                       *        
        637 TTTGCGTCATATAAAAAAAA
          1 TTTGCGTCATAAAAAAAAAA

               
        657 TTT
          1 TTT

        660 TGTTTTTGCG


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19    1  0.05
  20   20  0.95

ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30


Consensus pattern (20 bp):   
TTTGCGTCATAAAAAAAAAA
Done.