Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000791.1 Corchorus olitorius cultivar O-4 contig00791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35


Found at i:160 original size:35 final size:35

Alignment explanation


    Indices: 114--353  Score: 399
    Period size: 35  Copynumber: 6.9  Consensus size: 35

        104 AATTCTCAGG

                                               
        114 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA
          1 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA

                          *   *                
        149 AATTCAGATGACTCAGTGCAGCATCTTCAAAGACA
          1 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA

            *     *                            
        184 GATTCATATGACTCGGTGTAGCATCTTCAAAGACA
          1 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA

                              *               *
        219 AATTCAGATGACTCGGTGCAGCATCTTCAAAGACG
          1 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA

                                               
        254 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA
          1 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA

                                               
        289 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA
          1 AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA

              *      *     *              
        324 AAGTCAGATAACTCGATGTAGCATCTTCAA
          1 AATTCAGATGACTCGGTGTAGCATCTTCAA

        354 TATGAACTCA


Statistics
Matches: 190,  Mismatches: 15, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  35  190  1.00

ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25


Consensus pattern (35 bp):   
AATTCAGATGACTCGGTGTAGCATCTTCAAAGACA

Done.