Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007912.1 Corchorus olitorius cultivar O-4 contig07939, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1083
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35


Found at i:562 original size:22 final size:22

Alignment explanation


    Indices: 520--567  Score: 53
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        510 CGACGGTTTG

                         *       *
        520 CTTCCTCTTGAGTTGAAAATTT
          1 CTTCCTCTTGAGTCGAAAATTC

                             *     
        542 CTTCCTCTT-AGTCGATTAATTC
          1 CTTCCTCTTGAGTCGA-AAATTC

                
        564 CTTC
          1 CTTC

        568 ACTTGAAATC


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  21    5  0.23
  22   17  0.77

ACGTcount: A:0.19, C:0.25, G:0.10, T:0.46


Consensus pattern (22 bp):   
CTTCCTCTTGAGTCGAAAATTC
Done.