Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007914.1 Corchorus olitorius cultivar O-4 contig07941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2118
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:1898 original size:21 final size:21

Alignment explanation


    Indices: 1872--1921  Score: 73
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1862 GGAATGGCGA

                        **       
       1872 TGGCACGGGCATGGCCGGTGG
          1 TGGCACGGGCATAACCGGTGG

                      *          
       1893 TGGCACGGGCTTAACCGGTGG
          1 TGGCACGGGCATAACCGGTGG

                    
       1914 TGGCACGG
          1 TGGCACGG

       1922 TGAATGGTCG


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.12, C:0.24, G:0.48, T:0.16


Consensus pattern (21 bp):   
TGGCACGGGCATAACCGGTGG
Done.