Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000793.1 Corchorus olitorius cultivar O-4 contig00793, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:1058 original size:21 final size:20

Alignment explanation


    Indices: 1034--1074  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 20

       1024 AATGTGAGTT

                                 
       1034 TCAAAGTTTTTCTCTTGCTTG
          1 TCAAAGTTTTTCTCTT-CTTG

                       *        
       1055 TCAAAGTTTTTTTCTTCTTG
          1 TCAAAGTTTTTCTCTTCTTG

       1075 CTTGTGTCAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    4  0.21
  21   15  0.79

ACGTcount: A:0.15, C:0.17, G:0.12, T:0.56


Consensus pattern (20 bp):   
TCAAAGTTTTTCTCTTCTTG
Done.