Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007936.1 Corchorus olitorius cultivar O-4 contig07963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35


Found at i:355 original size:11 final size:11

Alignment explanation


    Indices: 341--378  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

        331 ATTCATAACA

                       
        341 AATTTATAATT
          1 AATTTATAATT

                       
        352 AATTTATAATT
          1 AATTTATAATT

                        
        363 -ATTTGATAATT
          1 AATTT-ATAATT

            *    
        374 TATTT
          1 AATTT

        379 TATATAGGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    4  0.16
  11   17  0.68
  12    4  0.16

ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58


Consensus pattern (11 bp):   
AATTTATAATT

Found at i:1101 original size:25 final size:23

Alignment explanation


    Indices: 1050--1107  Score: 71
    Period size: 25  Copynumber: 2.4  Consensus size: 23

       1040 GTCAGCCTTG

                               *   
       1050 AATTTTTTAATGTTTAATTCTTA
          1 AATTTTTTAATGTTTAATTATTA

                                      
       1073 AATTTATTTAATGTCTTAATTATCTA
          1 AATTT-TTTAATGT-TTAATTAT-TA

             *       
       1099 ATTTTTTTA
          1 AATTTTTTA

       1108 CAATCCACTA


Statistics
Matches: 30,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
  23    5  0.17
  24    8  0.27
  25   11  0.37
  26    6  0.20

ACGTcount: A:0.31, C:0.05, G:0.03, T:0.60


Consensus pattern (23 bp):   
AATTTTTTAATGTTTAATTATTA
Done.