Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007939.1 Corchorus olitorius cultivar O-4 contig07966, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3007
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Found at i:426 original size:23 final size:23

Alignment explanation


    Indices: 399--443  Score: 90
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        389 TTCTTTAATT

                                   
        399 CAACATGATCTTGACATTAATGC
          1 CAACATGATCTTGACATTAATGC

                                  
        422 CAACATGATCTTGACATTAATG
          1 CAACATGATCTTGACATTAATG

        444 TTATGAAAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31


Consensus pattern (23 bp):   
CAACATGATCTTGACATTAATGC
Done.