Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007941.1 Corchorus olitorius cultivar O-4 contig07968, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 653

Length: 1089
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:525 original size:22 final size:22

Alignment explanation


    Indices: 497--546  Score: 59
    Period size: 21  Copynumber: 2.3  Consensus size: 22

        487 ATACCCCTCG

                                   
        497 AAAATTTTATA-TGAAAGTTATC
          1 AAAATTTTATAGTG-AAGTTATC

                          **      
        519 AAAA-TTTATAGTGTGGTTATC
          1 AAAATTTTATAGTGAAGTTATC

                   
        540 AAAATTT
          1 AAAATTT

        547 CATTGGGGGG


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  21   16  0.67
  22    8  0.33

ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42


Consensus pattern (22 bp):   
AAAATTTTATAGTGAAGTTATC

Done.