Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007948.1 Corchorus olitorius cultivar O-4 contig07975, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30


Found at i:980 original size:15 final size:15

Alignment explanation


    Indices: 935--984  Score: 73
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        925 TGCACCATTT

                 *      *  
        935 CCATTATTGTTCACA
          1 CCATTGTTGTTCGCA

                           
        950 CCATTGTTGTTCGCA
          1 CCATTGTTGTTCGCA

                       *   
        965 CCATTGTTGTTTGCA
          1 CCATTGTTGTTCGCA

                 
        980 CCATT
          1 CCATT

        985 CACCCTAGCA


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   32  1.00

ACGTcount: A:0.18, C:0.26, G:0.14, T:0.42


Consensus pattern (15 bp):   
CCATTGTTGTTCGCA
Done.