Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007951.1 Corchorus olitorius cultivar O-4 contig07978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4826
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:733 original size:27 final size:28

Alignment explanation


    Indices: 702--774  Score: 94
    Period size: 27  Copynumber: 2.6  Consensus size: 28

        692 GGAGTATTTG

                                        
        702 AAATGACCAAAATGCCCCTGAACGTGC-
          1 AAATGACCAAAATGCCCCTGAACGTGCA

            *      *     **     *       
        729 GAATGACAAAAATAACCCTGGACGTGCA
          1 AAATGACCAAAATGCCCCTGAACGTGCA

                              
        757 AAATGACCAAAATGCCCC
          1 AAATGACCAAAATGCCCC

        775 AAGAGAACCT


Statistics
Matches: 36,  Mismatches: 9, Indels: 1
        0.78            0.20        0.02

Matches are distributed among these distances:
  27   22  0.61
  28   14  0.39

ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14


Consensus pattern (28 bp):   
AAATGACCAAAATGCCCCTGAACGTGCA

Found at i:2858 original size:5 final size:6

Alignment explanation


    Indices: 2843--2867  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       2833 TGTGAATTAT

                                         
       2843 TTTTTC TTTTTC TTTTTC TTTTTC T
          1 TTTTTC TTTTTC TTTTTC TTTTTC T

       2868 ATTTGATTTG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (6 bp):   
TTTTTC

Done.