Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007952.1 Corchorus olitorius cultivar O-4 contig07979, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43


Found at i:330 original size:29 final size:29

Alignment explanation


    Indices: 288--343  Score: 80
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        278 TTAGGATTAG

                                         
        288 TTATTTATGCTTTAA-TTTCAA-TTTCCT
          1 TTATTTATGCTTTAATTTTCAAGTTTCCT

                                         
        315 TTATCTTATGTCTTTAATTTTCAAGTTTC
          1 TTAT-TTATG-CTTTAATTTTCAAGTTTC

        344 ATTAATAAAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  27    4  0.16
  28    5  0.20
  29    6  0.24
  30    6  0.24
  31    4  0.16

ACGTcount: A:0.21, C:0.14, G:0.05, T:0.59


Consensus pattern (29 bp):   
TTATTTATGCTTTAATTTTCAAGTTTCCT
Done.