Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007954.1 Corchorus olitorius cultivar O-4 contig07981, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42


Found at i:720 original size:9 final size:9

Alignment explanation


    Indices: 706--730  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        696 ATTTCTTTTC

                     
        706 TTATTTTAA
          1 TTATTTTAA

                     
        715 TTATTTTAA
          1 TTATTTTAA

                   
        724 TTATTTT
          1 TTATTTT

        731 TGGGTTCATG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72


Consensus pattern (9 bp):   
TTATTTTAA

Found at i:951 original size:3 final size:3

Alignment explanation


    Indices: 943--979  Score: 74
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        933 TTGCTTTCTC

                                                             
        943 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T

        980 AAAATCGGTA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Done.