Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007957.1 Corchorus olitorius cultivar O-4 contig07984, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32


Found at i:615 original size:4 final size:4

Alignment explanation


    Indices: 608--641  Score: 68
    Period size: 4  Copynumber: 8.5  Consensus size: 4

        598 TACCAAAGGA

                                                      
        608 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA

        642 GTGAATGAAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   30  1.00

ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24


Consensus pattern (4 bp):   
AAAT

Done.