Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007961.1 Corchorus olitorius cultivar O-4 contig07988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39


Found at i:324 original size:30 final size:27

Alignment explanation


    Indices: 239--321  Score: 121
    Period size: 30  Copynumber: 3.0  Consensus size: 27

        229 GTTAATTTAG

                                       
        239 ACTTATTATTATTATAATAATTATTAA
          1 ACTTATTATTATTATAATAATTATTAA

                              *           
        266 ACTTATTATTAGTGGTATTATAATTATTAA
          1 ACTTATTATTA-T--TATAATAATTATTAA

                        *             
        296 ACTTATTATTATAATAATAATTATTA
          1 ACTTATTATTATTATAATAATTATTA

        322 TTAGTGGTAT


Statistics
Matches: 50,  Mismatches: 3, Indels: 6
        0.85            0.05        0.10

Matches are distributed among these distances:
  27   23  0.46
  28    1  0.02
  29    1  0.02
  30   25  0.50

ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51


Consensus pattern (27 bp):   
ACTTATTATTATTATAATAATTATTAA
Done.