Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000797.1 Corchorus olitorius cultivar O-4 contig00797, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1203
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:637 original size:76 final size:76

Alignment explanation


    Indices: 511--663  Score: 288
    Period size: 76  Copynumber: 2.0  Consensus size: 76

        501 TGTGAGTTTG

                                                                             
        511 TTTGTAATTTGTTTGTTTATTTGGTAGGTATGTAGTTTATTTATTTATGGTATAGTTTCTAGTTT
          1 TTTGTAATTTGTTTGTTTATTTGGTAGGTATGTAGTTTATTTATTTATGGTATAGTTTCTAGTTT

                *      
        576 GGGTTGAATTC
         66 GGGTCGAATTC

                                                                      *      
        587 TTTGTAATTTGTTTGTTTATTTGGTAGGTATGTAGTTTATTTATTTATGGTATAGTTTTTAGTTT
          1 TTTGTAATTTGTTTGTTTATTTGGTAGGTATGTAGTTTATTTATTTATGGTATAGTTTCTAGTTT

                       
        652 GGGTCGAATTC
         66 GGGTCGAATTC

             
        663 T
          1 T

        664 CATTTAGATG


Statistics
Matches: 75,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  76   75  1.00

ACGTcount: A:0.18, C:0.03, G:0.22, T:0.57


Consensus pattern (76 bp):   
TTTGTAATTTGTTTGTTTATTTGGTAGGTATGTAGTTTATTTATTTATGGTATAGTTTCTAGTTT
GGGTCGAATTC

Done.