Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007972.1 Corchorus olitorius cultivar O-4 contig07999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32


Found at i:891 original size:20 final size:20

Alignment explanation


    Indices: 866--910  Score: 90
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        856 ATCCATCTCT

                                
        866 GATCCTGGCTCGGCGGGGTA
          1 GATCCTGGCTCGGCGGGGTA

                                
        886 GATCCTGGCTCGGCGGGGTA
          1 GATCCTGGCTCGGCGGGGTA

                 
        906 GATCC
          1 GATCC

        911 ATGGGCACCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   25  1.00

ACGTcount: A:0.11, C:0.27, G:0.42, T:0.20


Consensus pattern (20 bp):   
GATCCTGGCTCGGCGGGGTA
Done.